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1

Simultaneous epitope and transcriptome measurement in single cells

Stoeckius, Marlon, Hafemeister, Christoph, Stephenson, William, Houck-Loomis, Brian, Chattopadhyay, Pratip K, Swerdlow, Harold, Satija, Rahul, Smibert, Peter

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2017

2

OMIP-002: Phenotypic analysis of specific human CD8+ T-cells using peptide-MHC class I multimers for any of four epitopes

Pratip K. Chattopadhyay, Mario Roederer, David A. Price

Journal:

Cytometry Part A

Année:

2010

Langue:

english

Fichier:

PDF, 198 KB

english, 2010

3

Quality assurance for polychromatic flow cytometry

Perfetto, Stephen P, Ambrozak, David, Nguyen, Richard, Chattopadhyay, Pratip, Roederer, Mario

Journal:

Nature Protocols

Année:

2006

Langue:

english

Fichier:

PDF, 286 KB

english, 2006

4

Brilliant violet fluorophores: A new class of ultrabright fluorescent compounds for immunofluorescence experiments

Pratip K. Chattopadhyay, Brent Gaylord, Adrian Palmer, Nan Jiang, Mary A. Raven, Geoff Lewis, Morgan A. Reuter, A.K.M. Nur-ur Rahman, David A. Price, Michael R. Betts, Mario Roederer

Journal:

Cytometry Part A

Année:

2012

Langue:

english

Fichier:

PDF, 2.52 MB

english, 2012

5

A deep profiler's guide to cytometry

Sean C. Bendall, Garry P. Nolan, Mario Roederer, Pratip K. Chattopadhyay

Journal:

Trends in Immunology

Année:

2012

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2012

6

Cytometry: Today’s technology and tomorrow’s horizons

Pratip K. Chattopadhyay, Mario Roederer

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2012

7

The Genetic Architecture of the Human Immune System: A Bioresource for Autoimmunity and Disease Pathogenesis

Roederer, Mario, Quaye, Lydia, Mangino, Massimo, Beddall, Margaret H., Mahnke, Yolanda, Chattopadhyay, Pratip, Tosi, Isabella, Napolitano, Luca, Terranova Barberio, Manuela, Menni, Cristina, Villanova

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2015

8

A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies

Chattopadhyay, Pratip K., Roederer, Mario, Bolton, Diane L.

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 568 KB

english, 2018

9

High-Parameter Single-Cell Analysis

Chattopadhyay, Pratip K., Winters, Aidan F., Lomas III, Woodrow E., Laino, Andressa S., Woods, David M.

Journal:

Annual Review of Analytical Chemistry

Année:

2019

Langue:

english

Fichier:

PDF, 645 KB

english, 2019

10

Techniques to improve the direct ex vivo detection of low frequency antigen-specific CD8+ T cells with peptide-major histocompatibility complex class I tetramers

Pratip K. Chattopadhyay, J. Joseph Melenhorst, Kristin Ladell, Emma Gostick, Phillip Scheinberg, A. John Barrett, Linda Wooldridge, Mario Roederer, Andrew K. Sewell, David A. Price

Journal:

Cytometry Part A

Année:

2008

Langue:

english

Fichier:

PDF, 550 KB

english, 2008

11

Publication of optimized multicolor immunofluorescence panels

Yolanda Mahnke, Pratip Chattopadhyay, Mario Roederer

Journal:

Cytometry Part A

Année:

2010

Langue:

english

Fichier:

PDF, 102 KB

english, 2010

12

Good cell, bad cell: Flow cytometry reveals T-cell subsets important in HIV disease

Pratip K. Chattopadhyay, Mario Roederer

Journal:

Cytometry Part A

Année:

2010

Langue:

english

Fichier:

PDF, 149 KB

english, 2010

13

Heavy metal contaminants can eliminate quantum dot fluorescence

David Zarkowsky, Laurie Lamoreaux, Pratip Chattopadhyay, Richard A. Koup, Stephen P. Perfetto, Mario Roederer

Journal:

Cytometry Part A

Année:

2011

Langue:

english

Fichier:

PDF, 2.25 MB

english, 2011

14

The use of quantum dot nanocrystals in multicolor flow cytometry

Pratip K. Chattopadhyay, Stephen P. Perfetto, Joanne Yu, Mario Roederer

Journal:

Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology

Année:

2010

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2010

15

A chromatic explosion: the development and future of multiparameter flow cytometry

Pratip K. Chattopadhyay, Carl-Magnus Hogerkorp, Mario Roederer

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 228 KB

english, 2008

16

A live-cell assay to detect antigen-specific CD4+ T cells with diverse cytokine profiles

Chattopadhyay, Pratip K, Yu, Joanne, Roederer, Mario

Journal:

Nature Medicine

Année:

2005

Langue:

english

Fichier:

PDF, 399 KB

english, 2005

17

Quantum dot semiconductor nanocrystals for immunophenotyping by polychromatic flow cytometry

Chattopadhyay, Pratip K, Price, David A, Harper, Theresa F, Betts, Michael R, Yu, Joanne, Gostick, Emma, Perfetto, Stephen P, Goepfert, Paul, Koup, Richard A, De Rosa, Stephen C

Journal:

Nature Medicine

Année:

2006

Langue:

english

Fichier:

PDF, 383 KB

english, 2006

18

Live-cell assay to detect antigen-specific CD4+ T-cell responses by CD154 expression

Chattopadhyay, Pratip K, Yu, Joanne, Roederer, Mario

Journal:

Nature Protocols

Année:

2006

Langue:

english

Fichier:

PDF, 785 KB

english, 2006

19

Innovation: Seventeen-colour flow cytometry: unravelling the immune system

Perfetto, Stephen P., Chattopadhyay, Pratip K., Roederer, Mario

Journal:

Nature Reviews Immunology

Année:

2004

Langue:

english

Fichier:

PDF, 335 KB

english, 2004

20

Risk factors for under- and overweight in school children of a low income area in Kolkata, India

Letizia von Laer Tschudin, Chandon Chattopadhyay, Srikanta Pandit, Katharina Schramm-Garaj, Ujjwol Seth, Pratip K. Debnath, Ulrich Keller

Journal:

Clinical Nutrition

Année:

2009

Langue:

english

Fichier:

PDF, 136 KB

english, 2009

21

Amine reactive dyes: An effective tool to discriminate live and dead cells in polychromatic flow cytometry

Stephen P. Perfetto, Pratip K. Chattopadhyay, Laurie Lamoreaux, Richard Nguyen, David Ambrozak, Richard A. Koup, Mario Roederer

Journal:

Journal of Immunological Methods

Année:

2006

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2006

22

Detection of low avidity CD8+ T cell populations with coreceptor-enhanced peptide-major histocompatibility complex class I tetramers

J. Joseph Melenhorst, Phillip Scheinberg, Pratip K. Chattopadhyay, Anna Lissina, Emma Gostick, David K. Cole, Linda Wooldridge, Hugo A. van den Berg, Ethan Bornstein, Nancy F. Hensel, Daniel C. Douek,

Journal:

Journal of Immunological Methods

Année:

2008

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2008

23

Quality assurance for polychromatic flow cytometry using a suite of calibration beads

Perfetto, Stephen P, Ambrozak, David, Nguyen, Richard, Chattopadhyay, Pratip K, Roederer, Mario

Journal:

Bioentrepreneur

Année:

2012

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2012

24

RchyOptimyx: Cellular hierarchy optimization for flow cytometry

Aghaeepour, Nima, Jalali, Adrin, O'Neill, Kieran, Chattopadhyay, Pratip K., Roederer, Mario, Hoos, Holger H., Brinkman, Ryan R.

Journal:

Cytometry Part A

Année:

2012

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2012

25

Highly multiplexed quantitation of gene expression on single cells

Dominguez, Maria H., Chattopadhyay, Pratip K., Ma, Steven, Lamoreaux, Laurie, McDavid, Andrew, Finak, Greg, Gottardo, Raphael, Koup, Richard A., Roederer, Mario

Journal:

Journal of Immunological Methods

Année:

2013

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2013

26

[Methods in Cell Biology] Recent Advances in Cytometry, Part A - Instrumentation, Methods Volume 102 || Quantum Dot Technology in Flow Cytometry

Chattopadhyay, Pratip K.

Année:

2011

Langue:

english

Fichier:

PDF, 280 KB

english, 2011

27

Single-cell technologies for monitoring immune systems

Chattopadhyay, Pratip K, Gierahn, Todd M, Roederer, Mario, Love, J Christopher

Journal:

Nature Immunology

Année:

2014

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2014

28

Alpha-lipoic acid and N -acetylcysteine protects intensive swimming exercise-mediated germ-cell depletion, pro-oxidant generation, and alteration of steroidogenesis in rat testis

Jana, Kuladip, Dutta, Ananya, Chakraborty, Pratip, Manna, Indranil, Firdaus, Syed Benazir, Bandyopadhyay, Debasish, Chattopadhyay, Ratna, Chakravarty, Baidyanath

Journal:

Molecular Reproduction and Development

Année:

2014

Langue:

english

Fichier:

PDF, 3.68 MB

english, 2014

29

Longitudinal Assessment of de Novo T Cell Production in Relation to HIV-Associated T Cell Homeostasis Failure

Chattopadhyay, Pratip K., Douek, Daniel C., Gange, Stephen J., Chadwick, Karen R., Hellerstein, Marc, Margolick, Joseph B.

Journal:

AIDS Research and Human Retroviruses

Année:

2006

Langue:

english

Fichier:

PDF, 294 KB

english, 2006

30

Q and B values are critical measurements required for inter-instrument standardization and development of multicolor flow cytometry staining panels

Perfetto, Stephen P., Chattopadhyay, Pratip K., Wood, James, Nguyen, Richard, Ambrozak, David, Hill, Juliane P., Roederer, Mario

Journal:

Cytometry Part A

Année:

2014

Langue:

english

Fichier:

PDF, 954 KB

english, 2014

31

Quantifying spillover spreading for comparing instrument performance and aiding in multicolor panel design

Nguyen, Richard, Perfetto, Stephen, Mahnke, Yolanda D., Chattopadhyay, Pratip, Roederer, Mario

Journal:

Cytometry Part A

Année:

2013

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2013

32

Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions

Kvistborg, Pia, Gouttefangeas, Cécile, Aghaeepour, Nima, Cazaly, Angelica, Chattopadhyay, Pratip K., Chan, Cliburn, Eckl, Judith, Finak, Greg, Hadrup, Sine Reker, Maecker, Holden T., Maurer, Dominik,

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 162 KB

english, 2015

33

Immunologic and Virologic Events in Early HIV Infection Predict Subsequent Rate of Progression

Ganesan, Anuradha, Chattopadhyay, Pratip K., Brodie, Tess M., Qin, Jing, Gu, Wenjuan, Mascola, John R., Michael, Nelson L., Follmann, Dean A., Roederer, Mario

Journal:

The Journal of Infectious Diseases

Année:

2010

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2010

34

flowClean: Automated identification and removal of fluorescence anomalies in flow cytometry data

Fletez-Brant, Kipper, Špidlen, Josef, Brinkman, Ryan R., Roederer, Mario, Chattopadhyay, Pratip K.

Journal:

Cytometry Part A

Année:

2016

Langue:

english

Fichier:

PDF, 734 KB

english, 2016

35

A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes

Aghaeepour, Nima, Chattopadhyay, Pratip, Chikina, Maria, Dhaene, Tom, Van Gassen, Sofie, Kursa, Miron, Lambrecht, Bart N., Malek, Mehrnoush, McLachlan, G. J., Qian, Yu, Qiu, Peng, Saeys, Yvan, Stanton

Journal:

Cytometry Part A

Année:

2016

Langue:

english

Fichier:

PDF, 169 KB

english, 2016

36

A simple tube adapter to expedite and automate thawing of viably frozen cells

Beddall, Margaret, Chattopadhyay, Pratip K., Kao, Shing-Fen, Foulds, Kathy, Roederer, Mario

Journal:

Journal of Immunological Methods

Année:

2016

Langue:

english

Fichier:

PDF, 301 KB

english, 2016

37

Re-visiting Fc-receptor blocking maneuvers in man

Smith, Paul J., Chattopadhyay, Pratip K.

Journal:

Cytometry Part A

Année:

2016

Langue:

english

Fichier:

PDF, 83 KB

english, 2016

38

What to expect when you’re expecting

Chattopadhyay, Pratip K.

Journal:

Science Immunology

Année:

2017

Langue:

english

Fichier:

PDF, 216 KB

english, 2017

39

Combined single-cell quantitation of host and SIV genes and proteins ex vivo reveals host-pathogen interactions in individual cells

Bolton, Diane L., McGinnis, Kathleen, Finak, Greg, Chattopadhyay, Pratip, Gottardo, Raphael, Roederer, Mario, Cullen, Bryan R.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2017

40

Kinetics of adult hematopoietic stem cell differentiation in vivo

Upadhaya, Samik, Sawai, Catherine M., Papalexi, Efthymia, Rashidfarrokhi, Ali, Jang, Geunhyo, Chattopadhyay, Pratip, Satija, Rahul, Reizis, Boris

Journal:

Journal of Experimental Medicine

Année:

2018

Langue:

english

Fichier:

PDF, 4.25 MB

english, 2018

41

OMIP-050: A 28-color/30-parameter Fluorescence Flow Cytometry Panel to Enumerate and Characterize Cells Expressing a Wide Array of Immune Checkpoint Molecules

Nettey, Leonard, Giles, Amber J., Chattopadhyay, Pratip K.

Journal:

Cytometry Part A

Année:

2018

Langue:

english

Fichier:

PDF, 680 KB

english, 2018

42

ISAC 34th International Congress Vancouver, Canada June 22 – 26, 2019

Chattopadhyay, Pratip K., Cossarizza, Andrea

Journal:

Cytometry Part A

Année:

2019

Langue:

english

Fichier:

PDF, 966 KB

english, 2019

43

Superior T memory stem cell persistence supports long-lived T cell memory

Lugli, Enrico, Dominguez, Maria H., Gattinoni, Luca, Chattopadhyay, Pratip K., Bolton, Diane L., Song, Kaimei, Klatt, Nichole R., Brenchley, Jason M., Vaccari, Monica, Gostick, Emma, Price, David A.,

Journal:

Journal of Clinical Investigation

Année:

2013

Langue:

english

Fichier:

PDF, 731 KB

english, 2013

44

Superior T memory stem cell persistence supports long-lived T cell memory

Lugli, Enrico, Dominguez, Maria H., Gattinoni, Luca, Chattopadhyay, Pratip K., Bolton, Diane L., Song, Kaimei, Klatt, Nichole R., Brenchley, Jason M., Vaccari, Monica, Gostick, Emma, Price, David A.,

Journal:

Journal of Clinical Investigation

Année:

2013

Fichier:

PDF, 731 KB

2013

45

The next frontier in single cell analysis: multimodal studies and clinical translation

Chattopadhyay, Pratip K., Chiu, Daniel T.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 151 KB

english, 2019

46

The next frontier in single cell analysis: multimodal studies and clinical translation

Chattopadhyay, Pratip K., Chiu, Daniel T.

Journal:

Année:

2019

Fichier:

PDF, 151 KB

2019

47

A Cytometrist's Guide to Coordinating and Performing Effective COVID â19 Research

Chattopadhyay, Pratip K., Filby, Andrew, Jellison, Evan R., Ferrari, Guido, Green, Cherie, Cherian, Sindhu, Irish, Jonathan, Litwin, Virginia

Journal:

Cytometry Part A

Année:

2020

Fichier:

PDF, 1.39 MB

2020